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/* gvSIG. Sistema de Informaci?n Geogr?fica de la Generalitat Valenciana
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 *
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 * Copyright (C) 2006 Instituto de Desarrollo Regional and Generalitat Valenciana.
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 *
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 * This program is free software; you can redistribute it and/or
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 * modify it under the terms of the GNU General Public License
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 * as published by the Free Software Foundation; either version 2
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 * of the License, or (at your option) any later version.
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 *
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 *
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307,USA.
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 *
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 * For more information, contact:
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 *
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 *  Generalitat Valenciana
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 *   Conselleria d'Infraestructures i Transport
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 *   Av. Blasco Ibez, 50
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 *   46010 VALENCIA
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 *   SPAIN
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 *
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 *      +34 963862235
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 *   gvsig@gva.es
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 *      www.gvsig.gva.es
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 *
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 *    or
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 *
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 *   Instituto de Desarrollo Regional (Universidad de Castilla La-Mancha)
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 *   Campus Universitario s/n
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 *   02071 Alabacete
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 *   Spain
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 *
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 *   +34 967 599 200
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 */
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package org.gvsig.remotesensing;
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import javax.swing.Icon;
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import org.gvsig.andami.PluginServices;
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import org.gvsig.andami.plugins.Extension;
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import org.gvsig.app.project.documents.view.ViewDocument;
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import org.gvsig.app.project.documents.view.gui.DefaultViewPanel;
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import org.gvsig.app.project.documents.view.toc.ITocItem;
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import org.gvsig.fmap.mapcontext.MapContext;
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import org.gvsig.fmap.mapcontext.layers.FLayer;
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import org.gvsig.fmap.mapcontext.layers.FLayers;
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import org.gvsig.fmap.raster.layers.FLyrRasterSE;
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import org.gvsig.fmap.raster.layers.ILayerState;
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import org.gvsig.raster.gui.IGenericToolBarMenuItem;
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import org.gvsig.remotesensing.principalcomponents.gui.PrincipalComponentPanel;
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import org.gvsig.tools.ToolsLocator;
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import org.gvsig.tools.extensionpoint.ExtensionPoint;
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import org.gvsig.tools.extensionpoint.ExtensionPointManager;
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/**
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 * Extensi?n para el c?lculo de Componentes Principales.
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 *
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 * @author Diego Guerrero Sevilla (diego.guerrero@uclm.es)
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 */
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public class PrincipalComponentsExtension extends Extension implements IGenericToolBarMenuItem {
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        private static final double NODATA = -99999999999999.;
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        /*
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         * (non-Javadoc)
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         * @see com.iver.andami.plugins.IExtension#initialize()
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         */
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        public void initialize() {
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                ExtensionPointManager extensionPoints =ToolsLocator.getExtensionPointManager();
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                ExtensionPoint point=extensionPoints.add("GenericToolBarMenu");
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                point.append("PrincipalComponents", "", this.getClass());
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        }
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        /*
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         * (non-Javadoc)
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         * @see com.iver.andami.plugins.IExtension#execute(java.lang.String)
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         */
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        public void execute(String actionCommand) {
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                if (actionCommand.equals("principal_components")){
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                        org.gvsig.andami.ui.mdiManager.IWindow activeWindow = PluginServices.getMDIManager().getActiveWindow();
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                        //si la ventana activa es de tipo Vista
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                        if (activeWindow instanceof DefaultViewPanel) {
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                                PrincipalComponentPanel pcPanel = new PrincipalComponentPanel ((DefaultViewPanel)activeWindow);
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                                PluginServices.getMDIManager().addWindow(pcPanel);
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                        }
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                }
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        }
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        /*
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         * (non-Javadoc)
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         * @see com.iver.andami.plugins.IExtension#isEnabled()
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         */
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        public boolean isEnabled() {
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                org.gvsig.andami.ui.mdiManager.IWindow f = PluginServices.getMDIManager().getActiveWindow();
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                if (f == null) {
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                        return false;
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                }
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                if (f.getClass() == DefaultViewPanel.class) {
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                        DefaultViewPanel vista = (DefaultViewPanel) f;
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                        ViewDocument model = vista.getModel();
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                        MapContext mapa = model.getMapContext();
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                        FLayers layers = mapa.getLayers();
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                        for (int i = 0; i < layers.getLayersCount(); i++)
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                                if (layers.getLayer(i) instanceof FLyrRasterSE)
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                                        return true;
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                }
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                return false;
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        }
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        /*
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         * (non-Javadoc)
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         * @see com.iver.andami.plugins.IExtension#isVisible()
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         */
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        public boolean isVisible() {
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                org.gvsig.andami.ui.mdiManager.IWindow f = PluginServices.getMDIManager().getActiveWindow();
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                if (f == null) {
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                        return false;
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                }
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                if (f instanceof DefaultViewPanel) {
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                        DefaultViewPanel vista = (DefaultViewPanel) f;
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                        ViewDocument model = vista.getModel();
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                        MapContext mapa = model.getMapContext();
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                        return mapa.getLayers().getLayersCount() > 0;
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                } else {
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                        return false;
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                }
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        }
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        private static double covariance(double[] xx, double x, double[] yy, double y) {
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                double dSum = 0;
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                int iValues = 0;
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                for (int i = 0; i < yy.length; i++) {
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                        if (xx[i] != NODATA && yy[i] != NODATA) {
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                                dSum += (xx[i] - x) * (yy[i] - y);
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                                iValues++;
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                        }
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                }
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                if (iValues > 1) {
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                        return dSum / (double) (iValues - 1);
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                } else {
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                        return NODATA;
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                }
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        }
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        private static double covariance(byte[][] xx, double x, byte[][] yy, double y) {
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                double dSum = 0;
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                int iValues = 0;
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                for (int i = 0; i < yy.length; i++) {
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                        for (int j = 0; j < yy[0].length; j++) {
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                                if (xx[i][j] != NODATA && yy[i][j] != NODATA) {
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                                        dSum += (xx[i][j] - x) * (yy[i][j] - y);
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                                        iValues++;
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                                }
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                        }
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                }
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                if (iValues > 1) {
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                        return dSum / (double) (iValues - 1);
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                } else {
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                        return NODATA;
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                }
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        }
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        /**
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         * Covariance of two 1D arrays of doubles, xx and yy
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         * @param xx
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         * @param yy
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         * @return
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         */
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        public static double covariance(byte[][] xx, byte[][] yy){
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                int nx = xx.length;
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                int ny = xx[0].length;
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                if (nx != yy.length)
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                        throw new IllegalArgumentException("length of x variable array, " + nx + " and length of y array, " + yy.length + " are different");
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                double sumx = 0.0D, meanx = 0.0D;
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                double sumy = 0.0D, meany = 0.0D;
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                for (int i = 0; i < nx; i++) {
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                        for (int j = 0; j < ny; j++) {
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                                sumx += xx[i][j];
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                                sumy += yy[i][j];
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                        }
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                }
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                meanx = sumx / ((double) nx * (double) ny);
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                meany = sumy / ((double) nx * (double) ny);
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                double sum = 0.0D;
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                for (int i = 0; i < nx; i++) {
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                        for (int j = 0; j < ny; j++)
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                                sum += (xx[i][j] - meanx) * (yy[i][j] - meany);
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                }
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                return sum / ((double) (nx * ny - 1));
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#execute(com.iver.cit.gvsig.project.documents.view.toc.ITocItem, com.iver.cit.gvsig.fmap.layers.FLayer[])
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         */
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        public void execute(ITocItem item, FLayer[] selectedItems) {
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                this.execute("principal_components");
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#getGroup()
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         */
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        public String getGroup() {
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                return "RasterProcess";
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#getIcon()
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         */
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        public Icon getIcon() {
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                return PluginServices.getIconTheme().get("blank-icon");
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#getOrder()
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         */
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        public int getOrder() {
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                return 0;
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#getText()
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         */
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        public String getText() {
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                return PluginServices.getText(this, "principal_components");
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#isEnabled(com.iver.cit.gvsig.project.documents.view.toc.ITocItem, com.iver.cit.gvsig.fmap.layers.FLayer[])
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         */
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        public boolean isEnabled(ITocItem item, FLayer[] selectedItems) {
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                if ((selectedItems == null) || (selectedItems.length != 1))
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                        return false;
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                if (!(selectedItems[0] instanceof ILayerState))
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                        return false;
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                if (!((ILayerState) selectedItems[0]).isOpen())
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                        return false;
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                return true;
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#isVisible(com.iver.cit.gvsig.project.documents.view.toc.ITocItem, com.iver.cit.gvsig.fmap.layers.FLayer[])
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         */
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        public boolean isVisible(ITocItem item, FLayer[] selectedItems) {
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                if ((selectedItems == null) || (selectedItems.length != 1))
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                        return false;
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                if (!(selectedItems[0] instanceof FLyrRasterSE))
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                        return false;
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                return true;
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        }
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        /*
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         * (non-Javadoc)
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         * @see org.gvsig.raster.gui.IGenericToolBarMenuItem#getGroupOrder()
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         */
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        public int getGroupOrder() {
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                return 0;
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        }
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}